Short time-series expression miner stem
Splet14. apr. 2024 · Furthermore, short time-series expression miner (STEM) and gene ontology (GO) enrichment analyses revealed five terms related to gamete generation. In addition, … http://www.sb.cs.cmu.edu/stem/
Short time-series expression miner stem
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Splet24. jun. 2011 · The significance of co-expression was then assessed by applying the clustering algorithm implemented in the short time-series expression miner STEM (version 1.3.6) [28,29] for co-expression profiling and a subsequent comparison of the number of genes assigned to a specific co-expression profile model to the expected number of … Splet20. jun. 2024 · The existing research on dairy cow mammary gland genes is extensive, but there have been few reports about dynamic changes in dairy cow mammary gland genes as milk yield decrease. For the first time, transcriptome analysis based on short time-series expression miner (STEM) and histological observations were performed using the …
Splet01. feb. 2006 · We introduce the Short Time-series Expression Miner (STEM) the first software program specifically designed for the analysis of short time series microarray … SpletExpression Miner (STEM)software or method as part of the data analysis: M. Chamankhah, E. Eftekharpour, S. Karimi-Abdolrezaee, P.C. Boutros, S. San-Marina, M.G. Fehlings. Genome-wide gene expression profiling of stress response in a spinal cord clip compression injury model. BMC Genomics, 14:583, 2013.
Splet05. apr. 2006 · In this paper we introduce the Short Time-series Expression Miner (STEM), the first software application designed specifically for the analysis of short time series gene expression datasets (3–8 time points). Data from short time series gene expression experiments poses unique challenges. SpletShort Time-series Expression Miner (STEM) See the STEM home page for the executable, user manual, citation information, mailing list, version log, and additional information. Dynamic Regulatory Events Miner (DREM)
SpletScreenshots of the Short Time-series Expression Miner (STEM). The input interface above is the first screen that appears when STEM is executed. In the first section of this …
Splet Short Time-series Expression Miner (STEM) analysis of the GMSCs. (A)... Download Scientific Diagram Short Time-series Expression Miner (STEM) analysis of the GMSCs. (A) Without F.... can gold be found in tennesseeSpletThe Short Time-series Expression Miner (STEM) software was used to cluster and compare average DEGs with coherent changes. Afterward, the different expression patterns of TSGs under the three treatment groups were compared. GO analysis and KEGG pathway enrichment analysis of TSGs were performed by Metascape. can gold be found in oklahomaSplet12. apr. 2024 · STEM (Short Time-series Expression Miner) analysis indicated significant variations in the mRNA expression across distinct muscle development stages. The differential expression of 12 selected DEGs was confirmed by RT-qPCR. The results of this study contribute to our understanding of the molecular mechanism of IMF deposition and … can gold be found in pennsylvaniaSpletThe Short Time-series Expression Miner (STEM) is a Java program for clustering, comparing, and visualizing short time series gene expression data from microarray experiments (~8 time points or fewer). STEM allows researchers to identify significant temporal expression profiles and the genes associated with these profiles and to … fit by nitSpletTo examine the expression pattern of DEGs in different frequencies, the expression data of each sample (in the order of treatment) were normalized to 0, log2 (v1/v0), and log2 (v2/v0), and then clustered using the Short Time-series Expression Miner software (STEM). 26 The parameters were set as follows: (1) maximum unit change in model profiles ... fit by otghttp://www.sb.cs.cmu.edu/stem/examples.html can gold be found in slateSpletGenes were clustered using Short Time-series Expression Miner (STEM) analysis tool with the abscissa representing the time scale of 5, 15, 30, and 60 minutes after the glucose pulse, and the... can gold be found in michigan